> For the complete documentation index, see [llms.txt](https://ez-lab.gitbook.io/cryodrgn/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://ez-lab.gitbook.io/cryodrgn/helpful-resources.md).

# Helpful Resources

(Work in progress)

## CryoDRGN Tips

* `cryodrgn --version`
* `cryodrgn view_config [outdir]`
  * As of version 2.3.0, you can also directly view the `config.yaml` file to see all parameters
* To optimize training speed, make sure the dimensions of the particle images and architecture settings (`--zdim` , `--enc-dim` , and `--dec-dim` ) are a multiple of 8.

## Chimerax

{% content-ref url="/pages/pQnhIUPhhcaFP30DnA0y" %}
[ChimeraX tips](/cryodrgn/helpful-resources/chimerax-tips.md)
{% endcontent-ref %}

## Useful Links

* Anaconda: <https://docs.anaconda.com/free/anaconda/install/>
* Jupyter notebooks: <https://jupyter.readthedocs.io/en/latest/running.html>
* Setting up jupyter notebooks remotely: <https://docs.anaconda.com/anaconda/user-guide/tasks/remote-jupyter-notebook/>