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cryoDRGN
  • CryoDRGN User Guide
    • News and Release Notes
  • Installation
  • CryoDRGN EMPIAR-10076 Tutorial
  • CryoDRGN2 Ab Initio Reconstruction
  • CryoDRGN-ET Subtomogram Analysis
  • CryoDRGN Conformational Landscape Analysis
  • Making long trajectories with cryoDRGN graph_traversal
  • FAQ & Troubleshooting
  • Helpful Resources
    • ChimeraX tips
  • Deprecated Workflows
    • Handling large datasets with cryoDRGN preprocess
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  1. Helpful Resources

ChimeraX tips

Simple workflow for making chimerax movies of cryodrgn volumes after running cryodrgn analyze

# kmeans20 volumes

vol all level X # replace X with desired isosurface level
mov record
mseries all
mov encode kmeans20.iso.levelX.mp4 framerate 3
# pcX volumes

vol all color cornflowerblue
mov record
mseries all
mov encode pcX.mp4 framerate 10
PreviousHelpful ResourcesNextHandling large datasets with cryoDRGN preprocess

Last updated 1 year ago