News and Release Notes

a timeline of updates to cryoDRGN

Release Timeline

• 06/2024: cryodrgn version 3.3.3 released, addressing issues in backproject, write_star, and filter

• 05/2024: cryodrgn version 3.3.2 released with improvements and fixes made to several features, including filtering with notebooks, FSC plots in backproject_voxel, and support for RELION 3.1 inputs in parse_pose_star

• 04/2024: cryodrgn version 3.3.0 released — first non-beta release of cryoDRGN-ET, new command cryodrgn direct_traversal, improved testing, and cleaned-up Jupyter notebooks

• 03/2024: cryodrgn version 3.2.0-beta released with new commands including cryodrgn_utils clean, cryodrgn_utils gen_mask, and cryodrgn_utils fsc

• 12/2023: cryodrgn version 3.1.0-beta released with new command cryodrgn filter for interactive filtering of particles

• 09/2023: CryoDRGN-ET for subtomogram analysis is now available in beta, as cryodrgn version 3.0.0-beta

• 06/2023: documentation clean up, available here on gitbook

• 05/2023: cryodrgn version 2.3.0 released with improvements and fixes to ab initio tools.

• 01/2023: cryodrgn version 2.2.0 released with new ab initio reconstruction tools and more.

• 07/2022: cryodrgn version 1.1.0 released with updated default architecture

• 05/2022: cryodrgn version 1.0.0 released with new landscape analysis, cryodrgn_utils, and more

Software Change Log

Comprehensive notes on all releases including minor and patch versions can be found at the Github repository: https://github.com/zhonge/cryodrgn/releases

Documentation Change Log

• May 2024:

  • updating and expanding tutorial on using cryoDRGN v3 for subtomogram analysis

  • creating new page group "Deprecated Workflows" initially populated with cryodrgn preprocess material

• June 2023:

  • moving documentation to gitbook (here) — the previous documentation found at Notion/sphinx will no longer be updated

  • new page on Making long trajectories with cryoDRGN graph_traversal